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Condition-Mapping.md
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# Condition Mapping
![fhir-to-omop_Condition](uploads/3ef0cdae25e7d56c6d0beeda2a4cd825/fhir-to-omop_Condition.png)
:information_source: All ICD Code will also be mapped to a Snomed Code. The mapping information is available in OMOP in the `public.MATERIALIZED VIEW.icd_snomed_domain_lookup`, which is generated from ICD10GM Vocabulary (CONCEPT) and CONCEPT_RELATIONSHIP tables.
:information_source: All ICD codes will also be mapped to a SNOMED Code. The mapping information is available in OMOP in the `cds_etl_helper.MATERIALIZED VIEW.icd_snomed_domain_lookup`, which is generated from ICD10GM vocabulary (CONCEPT) and CONCEPT_RELATIONSHIP tables.
## Condition to CONDITION_OCCURRENCE
| Source | Target | Comments |
| :---------------- | :---------------------- | :------------------------------------------------- |
| | condition_occurrence_id |this id is automatic generated in database |
| subject.reference | person_id | the `person_id` from PERSON |
| code.coding.code | condition_concept_id <br> condition_source_value <br> condition_source_concept_id | both primary and secondary ICD codes are written here |
| code.coding.code | condition_concept_id | both primary and secondary ICD codes are written here |
| recordedDate <br> onsetPeriod.start <br> onsetDateTimeType | condition_start_date <br> condition_start_datetime | one of the resources is used |
| | condition_end_date <br> condition_end_datetime | |
| | condition_type_concept_id| the data _`rank`_ from `Encounter` is used here <br> 1-> HD (44786627) <br> 2-> ND (44786629) |
|code.coding.extension|condition_status_concept_id |__A__(ausgeschlossene Diagnose) -> __37116688__ <br> __G__(gesicherte Diagnose) -> __4230359__ <br> __V__(Verdachtsdiagnose)-> __4033240__ <br> __Z__(symptomloser Zustand nach der betreffende Diagnose)-> __4284245__|
| | :x: stop_reason | |
| | :x: provider_id | |
| Encounter.reference | visit_occurrence_id | the `visit_occurrence_id` from VISIT_OCCURRENCE |
| |visit_detail_id| the `visit_detail_id` from VISIT_DETAIL|
|code.coding.extension|condition_status_concept_id <br> condition_status_resource_value|__A__(ausgeschlossene Diagnose) -> __37116688__ <br> __G__(gesicherte Diagnose) -> __4230359__ <br> __V__(Verdachtsdiagnose)-> __4033240__ <br> __Z__(symptomloser Zustand nach der betreffende Diagnose)-> __4284245__|
| code.coding.code | condition_source_value <br> condition_source_concept_id |
| | condition_source_concept_id | |
|code.coding.extension|condition_status_source_value|__A__(ausgeschlossene Diagnose) -> __37116688__ <br> __G__(gesicherte Diagnose) -> __4230359__ <br> __V__(Verdachtsdiagnose)-> __4033240__ <br> __Z__(symptomloser Zustand nach der betreffende Diagnose)-> __4284245__|
## Condition to MEASUREMENT
| Source | Target | Comments |
| :--------------- | :-------------------- | :---------------------------------------- |
| | measurement_id |this id is automatic generated in database |
|subject.reference | person_id | the `person_id` from PERSON |
| code.coding.code |measurement_concept_id <br> measurement_source_value <br> measurement_source_concept_id| _Analogous to CONDITION_OCCURRENCE_ |
| code.coding.code |measurement_concept_id| _Analogous to CONDITION_OCCURRENCE_ |
|recordedDate <br> onsetPeriod.start <br> onsetDateTimeType |measurement_date <br> measurement_datetime|_Analogous to CONDITION_OCCURRENCE_|
| | :x: measurement_time | |
| |measurement_type_concept_id|_Analogous to CONDITION_OCCURRENCE_|
| | :x: operator_concept_id | |
| | :x: value_as_number | |
| | :x: value_as_concept_id | |
| | :x: unit_concept_id | |
| | :x: range_low | |
| | :x: range_high | |
|Encounter.reference |visit_occurrence_id|the `visit_occurrence_id` from VISIT_OCCURRENCE|
| |visit_detail_id|the `visit_detail_id` from VISIT_DETAIL|
| code.coding.code |measurement_source_value| _Analogous to CONDITION_OCCURRENCE_ |
| code.coding.code |measurement_source_concept_id| _Analogous to CONDITION_OCCURRENCE_ |
| | :x: unit_source_value | |
| | :x: value_source_value | |
## Condition to OBSERVATION
| Source | Target | Comments |
| :--------------- | :-------------------- | :---------------------------------------- |
| | observation_id |this id is automatic generated in database |
|subject.reference | person_id | the `person_id` from PERSON |
| code.coding.code |observation_concept_id <br> observation_source_value <br> observation_source_concept_id| _Analogous to CONDITION_OCCURRENCE_ |
| code.coding.code |observation_concept_id| _Analogous to CONDITION_OCCURRENCE_ |
|recordedDate <br> onsetPeriod.start <br> onsetDateTimeType |observation_date <br> observation_datetime|_Analogous to CONDITION_OCCURRENCE_|
| |observation_type_concept_id|_Analogous to CONDITION_OCCURRENCE_|
| | :x: value_as_number | |
| | :x: value_as_string | |
| | :x: qualifier_concept_id | |
| | :x: unit_concept_id | |
| | :x: provider_id | |
|Encounter.reference |visit_occurrence_id|the `visit_occurrence_id` from VISIT_OCCURRENCE|
| |visit_detail_id|the `visit_detail_id` from VISIT_DETAIL|
| code.coding.code |observation_source_value| _Analogous to CONDITION_OCCURRENCE_ |
| code.coding.code |observation_source_concept_id| _Analogous to CONDITION_OCCURRENCE_ |
| | :x: unit_source_value | |
| | :x: qualifier_source_value | |
## Condition to PROCEDURE_OCCURRENCE
| Source | Target | Comments |
| :--------------- | :-------------------- | :---------------------------------------- |
| | procedure_occurrence_id|this id is automatic generated in database |
|subject.reference | person_id | the `person_id` from PERSON |
| code.coding.code |procedure_concept_id <br> procedure_source_value <br> procedure_source_concept_id| _Analogous to CONDITION_OCCURRENCE_ |
| code.coding.code |procedure_concept_id| _Analogous to CONDITION_OCCURRENCE_ |
|recordedDate <br> onsetPeriod.start <br> onsetDateTimeType |procedure_date <br> procedure_datetime|_Analogous to CONDITION_OCCURRENCE_|
| |procedure_type_concept_id|_Analogous to CONDITION_OCCURRENCE_|
| | :x: modifier_concept_id | |
| | :x: quantity | |
| | :x: provider_id | |
|Encounter.reference |visit_occurrence_id|the `visit_occurrence_id` from VISIT_OCCURRENCE|
| |visit_detail_id|the `visit_detail_id` from VISIT_DETAIL|
| code.coding.code |procedure_source_value| _Analogous to CONDITION_OCCURRENCE_ |
| code.coding.code |procedure_source_concept_id| _Analogous to CONDITION_OCCURRENCE_ |
| | :x: modifier_source_value | |
## Example
......